Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
1QD9 Chain:A ((1-124))
-TKAVHTKHAPAAIGPYSQGIIVNNMFYSSGQIPLTPSGEMVNGDIKEQTHQVFSNLKAVLEEAGASFETVVKATVFIADMEQFAEVNEVYGQYFDTHKPARSCVEVARLPKDALVEIEVIALVK
General information:
TITO was launched using:
RESULT:
Template:
1QD9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66505 for 960 contacts (-69.3/contact) +
2D Compatibility (PS) -13577 + (NN) -5910 + (LL) 208
1D Compatibility (HY) -17200 + (ID) 6200
Total energy: -109184.0 ( -113.73 by residue)
QMean score : 0.612
(partial model without unconserved sides chains):
PDB file :
Tito_1QD9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QD9-query.scw
PDB file :
Tito_Scwrl_1QD9.pdb
: