Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFKFKKNFLVGLSAALMSISLFSATASAASTDYWQNWTDGGGIVNAVNGSGGNYSVNWSNTGNFVVGKGWTTGSPFRTINYNAGVWAPNGNGYLTLYGWTRSPLIEYYVVDSWGTYRPT--GTYKGTVKSDGGTYDIYTTTRYNAPSIDGDRTTFTQYWSVRQSKRPTGSNATITFSNHVNAWKSHGMNLGSNWAYQVMATEGYQSSGSSNVTVW
3AKT Chain:B ((14-189))--------------------------------FYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINF-SGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGT-ATFYQYWSVRRNHRSSGS---VNTANHFNAWAQQGLTLGT-MDYQIVAVEGYFSSGSASITV-


General information:
TITO was launched using:
RESULT:

Template: 3AKT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1025 -10703 -10.44 -61.51
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain B : 0.79

3D Compatibility (PKB) : -10.44
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.556

(partial model without unconserved sides chains):
PDB file : Tito_3AKT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3AKT-query.scw
PDB file : Tito_Scwrl_3AKT.pdb: