Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTMIVASVATGALATIARWLLTRRSVILREVGPETTPAAPARTAELGLSGAGPTVVHFRAPGCAPCDRVRRGVGDVCADLGDVAHIEVDLDSNPQAARRFSVLSLPTTLIFDVDGRQRYRTSGVPKAADLRSALKPLLA
2VIM Chain:A ((18-103))
--------------------------------------------------KGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTAMPTFVFI-KDGKEVDRFSGA-NETKLRETITRH--
General information:
TITO was launched using:
RESULT:
Template:
2VIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50067 for 581 contacts (-86.2/contact) +
2D Compatibility (PS) -9643 + (NN) -2943 + (LL) 4616
1D Compatibility (HY) -5200 + (ID) 1300
Total energy: -64537.0 ( -111.08 by residue)
QMean score : 0.776
(partial model without unconserved sides chains):
PDB file :
Tito_2VIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VIM-query.scw
PDB file :
Tito_Scwrl_2VIM.pdb
: