Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTGPLAAARSVAATKSMTAPTVDERPDIKKGLAGVVVDTTAISKVVPQTNSLTYRGYPVQDLAARCSFEQVAFLLWRGELPTDAELALFSQRERASRRVDRSMLSLLAKLPDNCHPMDVVRTAISYLGAEDPDEDDAAANRAKAMRMMAVLPTIVAIDMRRRRGLPPIAPHSGLGYAQNFLHMCFGEVPETAVVSAFEQSMILYAEHGFNASTFAARVVTSTQSDIYSAVTGAIGALKGRLHGGANEAVMHDMIEIGDPANAREWLRAKLA-RKEKIMGFGHRVYRHGDSRVPTMKRALERVGTVR-DGQRWLDIYQVLAAEMAS---ATGILPNLDFPTGPAYYLMGFDIASFTPIFVMSRITGWTAHIMEQATA-NALIRPLSAYCGHEQRVLPGTF |
| 1VGM Chain:A ((3-374)) | -------------------------VEVSRGLENVIIKTTGLTYIDGINGILRYRGYDINDLVNYASYEELIHLMLYGELPNRQQLNQIKGIINESFEVPEQVISTIFSMPRNCDAIGMMETAFGILASIYDPKWNRATNKELAVQIIAKTATITANIYRAKEGLKPKIPEPSESYAESFLAATFGKKPTQEEIKAMDASLILYTDHEVPASTTAALVASSTLSDMYSCIVAALAALKGPLHGGAAEEAFKQFVEIGSVENADKWFEEKIIKGKSRLMGFGHRVYKTYDPRAKIFKTLAKSFAEKNENVKKYYEIAERIEKLGVDTFGSKHIYPNTDFYSGIVFYALGFPIYMFTSLFALSRVLGWLAHIIEYVEEQHRLIRPRALYIGPEKREFKP-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VGM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193874 for 3078 contacts (-63.0/contact) +
2D Compatibility (PS) -39845 + (NN) -20239 + (LL) 2016
1D Compatibility (HY) -26400 + (ID) 6300
Total energy: -284642.0 ( -92.48 by residue)
QMean score : 0.498
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