Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTVTDDYLANNVDYASGFKGPLPMPPSKHIAIVACMDARLDV--YRMLGIKEGEAHVIRNAGCVVTDDVIRSLAISQRLLGTREIILLHHTDCGMLTFTDDDFKRAIQDETGIR-------PTWSPESYPDAVEDVRQSLRRIEVNPFVTKHTSLRGFVFDVATGKLNEVTP
1G5C Chain:A ((2-167))
--IIKDILRENQDFR--FRDLSDLKHSPKLCIITCMDSRLIDLLERALGIGRGDAKVIKNAGNIVDDGVIRSAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMRELGVEEEVIENFSIDV-LNPVGDEEENVIEGVKRLKSSPLIPESIGVHGLIIDINTGRLKPLY-
General information:
TITO was launched using:
RESULT:
Template:
1G5C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103397 for 1060 contacts (-97.5/contact) +
2D Compatibility (PS) -16666 + (NN) -7333 + (LL) -108
1D Compatibility (HY) -13200 + (ID) 2600
Total energy: -143304.0 ( -135.19 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1G5C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1G5C-query.scw
PDB file :
Tito_Scwrl_1G5C.pdb
: