Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDLPSLDASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
1W29 Chain:C ((15-160))
--------ASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELRAHS
General information:
TITO was launched using:
RESULT:
Template:
1W29.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115826 for 1208 contacts (-95.9/contact) +
2D Compatibility (PS) -16478 + (NN) -12004 + (LL) 100
1D Compatibility (HY) -18000 + (ID) 7300
Total energy: -169508.0 ( -140.32 by residue)
QMean score : 0.681
(partial model without unconserved sides chains):
PDB file :
Tito_1W29.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W29-query.scw
PDB file :
Tito_Scwrl_1W29.pdb
: