Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRAPDTPEVVLRLRGVCKRYGSITAVSNLDLDVHDAEVMALLGPNGAGKTTTVEMCEGFVRPDAGSIEVLGLDPITDNARLRARIGVMLQGGGGYPAARAGEMLDLVASYAANP-----LDPHWLLDTLGLTEAARTTYRRLSGGQQQRLALACALVGRPQLVFLDEPTAGMDAHARVLVWELIDALRR-DGVTVVLTTHHLKEAEELADRLVIIDHGVTVAAGTPAELMRSGAKDQLRFTAPPRLDLSLLASALPEGYQATELTPGEYLVEGPVDPQVLATVTAWCAQIDVLATDMRVEQRSLEDVFLDLTGRKLRQ
4YER Chain:A ((3-307))--------EDIIVVENLVKKFGDFEAVKGVSFSVKKGEIFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHMWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTELKRMVGKEIIYVR------------DFIES--CRKLPDGRLELNVED------------------IEEITYHKPTLNDVFLHLTGREL--


General information:
TITO was launched using:
RESULT:

Template: 4YER.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16812 for 2014 contacts (-8.3/contact) +
2D Compatibility (PS) -26579 + (NN) 4513 + (LL) 2888
1D Compatibility (HY) 3600 + (ID) 1400
Total energy: -33790.0 ( -16.78 by residue)
QMean score : 0.053

(partial model without unconserved sides chains):
PDB file : Tito_4YER.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4YER-query.scw
PDB file : Tito_Scwrl_4YER.pdb: