Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKAIFITGAGSGMGREGATLFHANGWRVGAIDRNEDGLAALRVQL---GAERLWARAVDVTDKAALEGALADFC--AGNVGGGLDMMWNNAGIGEGGW-FEDVPYEAAVRVVDVNFKAVLTGAYAALPYLKKAPGSLMFSTSSSSGTYGMPRIAVYSATKHAVKGLTEALSVEWQRHGVRVADVLPGLIDTAILTSTRQHSDEGPYTISAEQIRAAAPKKGMFRLMPSSSVAEAAWRAYQHPTRLHWYVPRSIRWIDRLKGVSPEFVRRHIAKSLATLEPKRK |
4FN4 Chain:A ((8-210)) | -KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKA-DVSKKKDVE----EFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLT-------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FN4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -68700 for 1710 contacts (-40.2/contact) +
2D Compatibility (PS) -21120 + (NN) -8119 + (LL) 6776
1D Compatibility (HY) -10000 + (ID) 3250
Total energy: -104413.0 ( -61.06 by residue)
QMean score : 0.387
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