Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
3NWY Chain:A ((47-281))
--------------------------LSGYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNF---AQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAE-----PEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
General information:
TITO was launched using:
RESULT:
Template:
3NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -215637 for 1928 contacts (-111.8/contact) +
2D Compatibility (PS) -24875 + (NN) -9706 + (LL) 1040
1D Compatibility (HY) -34400 + (ID) 11350
Total energy: -294928.0 ( -152.97 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_3NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NWY-query.scw
PDB file :
Tito_Scwrl_3NWY.pdb
: