Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTRIIGGVAGGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGL---SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVDS-ADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERLFANV
4DCM Chain:A ((222-337))
------------------------------------------LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPF----DNVAWEMFHHARR--CLKINGELYIVANRH---------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DCM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77321 for 788 contacts (-98.1/contact) +
2D Compatibility (PS) -11623 + (NN) -7475 + (LL) 4688
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -96681.0 ( -122.69 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_4DCM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DCM-query.scw
PDB file :
Tito_Scwrl_4DCM.pdb
: