Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLAIIAGDGIGPEVTAEAVKVLDAVVPGVQKTSYD----LGARRFHATGEVLPDSVVAELRNHDAILLGAIGDPSV----PSGVLERGLLLRLRFELDHHINLRPARLYPGVA--SPLSGN---PGIDFVVVREGTEGPYTGNGGAIRVGTPNEVATEVSVNTAFGVRRVVADAFERARRRRKHLTLVHKTNVLTFAGGLWLRTVDEVGECYPDVEVAYQHVDAATIHMITDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGNIDATRANPSMFEPVHGSAPDIAGQGIADPTAAIMSVALLLSH-LGEHDAAARVDRAVEA---------HLATRGSERLATSDVGERIAAAL |
| 1VLC Chain:A ((13-362)) | MKIAVLPGDGIGPEVVREALKVLEVVEKKTGKTFEKVFGHIGGDAIDRFGEPLPEETKKICLEADAIFLGSVGGPKWDDLPPEKRPEIGGLLALRKMLNLYANIRPIKVYRSLVHVSPLKEKVIGSGVDLVTVRELSYGVYYGQPR----GLDEEKGFDTMIYDRKTVERIARTAFEIAKNRRKKVTSVDKANVL-YSSMLWRKVVNEVAREYPDVELTHIYVDNAAMQLILKPSQFDVILTTNMFGDILSDESAALPGSLGLLPS----ASFGDKNLYEPAGGSAPDIAGKNIANPIAQILSLAMMLEHSFGMVEEARKIERAVELVIEEGYRTRDIAEDPEKAVSTSQMGDLICKKL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VLC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -201027 for 2785 contacts (-72.2/contact) +
2D Compatibility (PS) -35536 + (NN) -17881 + (LL) 568
1D Compatibility (HY) -23600 + (ID) 6750
Total energy: -284226.0 ( -102.06 by residue)
QMean score : 0.519
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