Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAEAADAINFGLAGRVVLVTGGVRGVGAGISSVFAEQGATVITCARRAVDGQPYEFHRCDIRDEDSVKRLVGEIGERHGRLDMLVNNAGGSPYALAAEATHNFHRKIVELNVLAPLLVSQHANVLMQAQPNGGSIVNICSVSGRRPTPGTAAYGAAKAGLENLTTTLAVEWAPKVRVNAVVVGMVET----ERSELFYGD-----AESIARVAATVPLGRLARPADIGWAAAFLASDAASYISGATLEVHGGGEPPPYLGASSANK
2DTD Chain:A ((6-245))
-------------LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYM-IRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGG--------------
General information:
TITO was launched using:
RESULT:
Template:
2DTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157023 for 1983 contacts (-79.2/contact) +
2D Compatibility (PS) -25410 + (NN) -12573 + (LL) 1068
1D Compatibility (HY) -17600 + (ID) 3800
Total energy: -215338.0 ( -108.59 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_2DTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DTD-query.scw
PDB file :
Tito_Scwrl_2DTD.pdb
: