Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSVAPKEIAGHGLLDGKVVVVTAAAGTGIGSATARRALAEGADVVISDHHERRLGETAAELSALGLGRVEHVVCDVTSTAQVDALIDSTTARMGRLDVLVNNAGLGGQTPVADMTDDEWDRVLDVSLTSVFRATRAALRYFRDAPHGGVIVNNASVLGWRAQHSQSHYAAAKAGVMALTRCSAIEAAEYGVRINAVSPSIAR---HKFLDKTASAELLDRLAAGEAFGRAAEPWEVAATIAFLASDYSSYLTGEVISVSCQHP
4WJZ Chain:B ((10-245))
---------------LEGKVALVTGAS-RGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKG----MALNVTNPESIEAVLKAITDEFGGVDILVNNA---------------WSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVASVVG-------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT-----EQRTATLAQVPA----GRLGDPREIASAVAFLASPEAAYITGETLHVN----
General information:
TITO was launched using:
RESULT:
Template:
4WJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131856 for 1721 contacts (-76.6/contact) +
2D Compatibility (PS) -22628 + (NN) -5355 + (LL) 2428
1D Compatibility (HY) -12800 + (ID) 4000
Total energy: -174211.0 ( -101.23 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_4WJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WJZ-query.scw
PDB file :
Tito_Scwrl_4WJZ.pdb
: