Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAILNILEFPDPRLRTIAKPVEVVDDAVRQLIDDMFETMYEAPGIGLAATQVNVHKRIVVMDLS--EDKSEPRVFINPEFEPLTEDMDQYQEGCLSVPGFYENVDRPQKVRIKALDRDGNPFEEVAEGLLAVCIQHECDHLNGKLFVDYLSTLKRDRIRKKLEKQHRQQA
4DR9 Chain:C ((19-163))
---LDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKGFAVQAV
General information:
TITO was launched using:
RESULT:
Template:
4DR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73796 for 1072 contacts (-68.8/contact) +
2D Compatibility (PS) -14976 + (NN) -2670 + (LL) 556
1D Compatibility (HY) -14800 + (ID) 3650
Total energy: -109336.0 ( -101.99 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_4DR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR9-query.scw
PDB file :
Tito_Scwrl_4DR9.pdb
: