Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MSKQIPVQDVTPP----AKGDTNNNDLYAKREKIYTRAFT--GIFRRLRMVGGAALFLLYF---GTVWLNWSGRQAVWWDLPERKFYIFGATFWPQDFMLLSWLLIVCAFGLFFITVFAGRVWCGYTCPQSVWTWIY-MWCEKVTEGDRNQRI--KLDKAPMSGN-----------KLLRKTAKH--------SLWLLIG---------------LVTG-----LTFVGYFSP-----IRELIPELLTGQAD---------GWAYFWVGFFTLATYGNAGWLREQVCIYMCPY---ARFQSVMFDKDTLI-------VSYDPRRGE---------------KRGPRKKSLDYKAQ-------GLGDCIDCTMCVQVCP----TGIDIRDGLQIE-CIGCAACIDACDSIMEKMNYPKGL--ISYTTEHNLNG------------QKTHLARPRLI----------GYAIALVLMISAL-ITAVVLRPLVGFDV-----------------------SKDRV-----LYRENELGR-----IENVYSLKIMNKDQQD----HTYILG--------------AKGLEGLTLEGRRELKVAAGDILNLPMELSIEPEKLPSTTNEIVFTIESADDPSIHKEA-------KSRFIGPRTR----------------- |
| 4RKN Chain:A ((43-702)) | MQMTKEAREIIAHPKGTKESRGVISLQDYIVEEQAMYDWLFKNHPIFTKY---GGKTVGKLVVKDRGEEWIE-EGRGNDFSKASKRS----GGEGFSSMMYRVA-----RNSTLQYPNKFIGPEKCGECHPAQYETWSRSRHATTIRFPGEHPEVNNKLNDPVFDKDTASILPQGITPDVVYCTVGHIRTKFGFFDAWLLRGTYHVEGGLLKNGTGQIVAGGNQWQRTWALNLSPEVAKKIKKWVPDFPVTLEEYGDNGGYVRGLASYAAKYKKSMSFQASTSYCEVCHPWKFDFKNESEFYAALGNAKELQKHTISKGVSCEECHGAGGHLEGGSGLLISNCERCHQRFSYSPDLMRNNPLNAGKPDLALSSKFKSMGPGCGSEGSQTYFTAHYEKGMRCATCHDPHD-VTGNVTGEKGIKGVSYNSEQGYLSSLYSKPKLKKECTDCHKEQAYIQSKADTHSKNSCASCHMPFMMSCENFYAIQFQDQAGFDTQRRAHIWKIDVDPARKSLVAGSTSKDPRDGKDWHFERNEEGRNFVDLMWACARTTWADKDQAEAKGCHSPVVSELKETLHFKDQKQVYNEVMGWQTPVKDKFTQVKVGIQGLYSLLEVKKLA-PSDKTRVYELIEKAQDTVDLIEKDGSWGMHGFKYTKQRLDAAVEYINEAQRIMKKSL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RKN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -190573 for 3034 contacts (-62.8/contact) +
2D Compatibility (PS) -46279 + (NN) 11796 + (LL) 2268
1D Compatibility (HY) -6400 + (ID) 4800
Total energy: -233988.0 ( -77.12 by residue)
QMean score : 0.108
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