Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSAEEIQRMSVAGALTAKVLEALDEVVRPGISTAEIDRFCERYIVDTLAAIPGSKGQYGYPFTVNTSVNEVVCHGWPSAQQILRDGDIVNVDVTVIKDGYFGDSSKMYRVGAIDRQAQKLLDVTRECLYRAIRVVRPDATLGDIGHAIQSHAEANGYSVVREYCGHGIGRKMHEAPQVLHFGRAGAGARLKAGMTFTIEPMINQGGHAVKLHK-DGWTVTTRDRRLSAQYEHTVLVTERGCRVLTLRDEEREALADLAG
3MX6 Chain:A ((8-258))
-IHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFIT-SHNAIPAPLNYKGFPKSICTSINHVVCHGIPNDKP-LKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRLIQVTYDAMMKGIEVVRPGAKLGDIGYAIQSYAEKHNYSVVRDYTGHGIGRVFHDKPSILNYGRNGTGLTLKEGMFFTVEPMINAGNYDTILSKLDGWTVTTRDKSLSAQFEHTIGVTKDGFEIFTLSPKKLD-------
General information:
TITO was launched using:
RESULT:
Template:
3MX6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127008 for 2179 contacts (-58.3/contact) +
2D Compatibility (PS) -27284 + (NN) -10401 + (LL) 872
1D Compatibility (HY) -24000 + (ID) 6000
Total energy: -193821.0 ( -88.95 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3MX6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MX6-query.scw
PDB file :
Tito_Scwrl_3MX6.pdb
: