Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPFRNIGIIGRLGSTQVLDTIRRLKKFLIDRHLHVILEDTIAEVLPGHGLQTCSRKIMGEICDLVVVVGGDGSMLGAARALARHKVPVLGINRGSLGFLTDIRPDELEAKVGEVLDGQYIVESRFLLDAQVRRGIDSMGQGDALNDVVLHPGKSTRMIEFELYIDGQFVCSQKADGLIVATPTGSTAYALSAGGPIMHPKLDAIVIVPMYPHMLSSRPIVVDGNSELKIVVSPNMQIYPQVSCDGQNHFTCAPGDTVTISKKPQKLRLIHPIDHNYYEICRTKLGWGSRLGGGD
1YT5 Chain:A ((1-256))
----MKIAILYREEREK---EGEFLKEKISK-EHEVIE-FG---E---------ANAPGRVTADLIVVVGGDGTVLKAAKKAA-DGTPMVGFKAGRLGFLTSYTLDEIDRFLEDLRNWNFREETRWFIQIESEL-----GNHLALNDVTLERDLSGKMVEIEVEVEHHSSMWFFADGVVISTPTGSTAYSLSIGGPIIFPECEVLEISPIAPQFFLTRSVVIPSNFKVVVES----QRDINMLVDGVLTGK---TKRIEVKKSRRYVRILRPPEYDYVTVIRDKLGYGRR-----
General information:
TITO was launched using:
RESULT:
Template:
1YT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179007 for 2136 contacts (-83.8/contact) +
2D Compatibility (PS) -28837 + (NN) -14398 + (LL) 1232
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -240210.0 ( -112.46 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_1YT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT5-query.scw
PDB file :
Tito_Scwrl_1YT5.pdb
: