Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRRQQSGFTLIEIMVVVVILGILAALVVPQVMSRPDQAKVTVAKGDIKAIAAALDMYKLDNFAYPSTQQGLEALVKKPTGNPQPKNWNKDGYLKKLPVDPWGNPYQYLAPGTKGPFDLYSLGADGKEGGSDNDADIGNWDN
3GN9 Chain:A ((4-111))
---------------------------------GNKEKADQQKAITDIVALENALDMYKLDNSVYPTTDQGLEALVTKPSSPEPRNYRN-GGYIKRLPKDPWGNEYQYMSPGDKGTIDIFTLGADGQEGGEGAAADIGNWNM
General information:
TITO was launched using:
RESULT:
Template:
3GN9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5606 for 764 contacts (7.3/contact) +
2D Compatibility (PS) -12191 + (NN) -13508 + (LL) 4296
1D Compatibility (HY) -7200 + (ID) 2950
Total energy: -25947.0 ( -33.96 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_3GN9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GN9-query.scw
PDB file :
Tito_Scwrl_3GN9.pdb
: