Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTDRFTRLLGIQQPIIQAPMLGVSTPALAAAVSNAGGLGSIAITG-SAAEKGRALIREVRGLTDKPFNVNLFCHRPGQADPARERAWLDYLKPLFAEFGAEPPVRLKNIYLSFLEDPTLLPMLLEERPAAVSFHFGAPPRDQVRALQAVGIRVLVCATTPEEAALVEAAGADAVVAQGIEAGGHRGVFEPERGDAAIGTLALVRLLAARGSLPVVAAGGIMDGRGIRAALELGASAVQMGTAFVLCPESSANAAYREALKGPRAARTALTVTMSGRSARGLPNRMFFDAAAPGVPPLPDYPFVYDA-TKALQTAALARGNHDFAAQWAGQGAALAREL-PAAELLRTLVEELRG |
| 2GJL Chain:A ((4-315)) | FRTRFTETFGVEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPV--------------------------------PY--AEYRAAIIEAGIRVVETAGNDPG-EHIAEFRRHGVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHPGEDD-------IPGLVLLPAAANRLRVPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAIRAADERSTDLIMRSLRNTARVARNAISQEVLAIEARGGAGYADIAALVSGQRGRQVYQQGDTDLGIWSAGMVQGLIDDEPACAELLRDIVEQARQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GJL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200596 for 2780 contacts (-72.2/contact) +
2D Compatibility (PS) -34186 + (NN) -22277 + (LL) 2512
1D Compatibility (HY) -10000 + (ID) 4700
Total energy: -269247.0 ( -96.85 by residue)
QMean score : 0.479
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