Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKGHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLPSGDQPAEPGNA
3M4G Chain:G ((5-70))
----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKAAISTVVPSRPVRL------------
General information:
TITO was launched using:
RESULT:
Template:
3M4G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46309 for 396 contacts (-116.9/contact) +
2D Compatibility (PS) -7079 + (NN) -727 + (LL) -364
1D Compatibility (HY) -11200 + (ID) 3250
Total energy: -68929.0 ( -174.06 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_3M4G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M4G-query.scw
PDB file :
Tito_Scwrl_3M4G.pdb
: