Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRPPSPLPARWLCVLAGALAWALGPAGGQAARLQEECDYVQMIEVQHKQCLEEAQLENETIGCSKMWDNLTCWPATPRGQVVVLACPLIFKLFSSIQGRNVSRSCTDEGWTHLEPGPYPIACGLDDKAASLDEQQTMFYGSVKTGYTIGYGLSLATLLVATAILSLFRKLHCTRNYIHMHLFISFILRAAAVFIKDLALFDSGESDQCSEGSVGCKAAMVFFQYCVMANFFWLLVEGLYLYTLLAVSFFSERKYFWGYILIGWGVPSTFTMVWTIARIHFEDYGCWDTINSSLWWIIKGPILTSILVNFILFICIIRILLQKLRPPDIRKSDSSPYSRLARSTLLLI--PLFGVHYIMFAFFPDNFKPE----VKMVFELVVGSFQ-GFVVAILYCFLNGEVQAELRRKWRRWHLQGVLGWNPKYRHPSGGSNGATCSTQVSMLTRVSPGARRSSSFQAEVSLV |
4LDV Chain:A ((16-356)) | ---SDALCRELWHACAGPLV-----------TLPREGERVYYFPEGHMEQLEASMHQGLE-------------QQMPSFN---LPSKILCKVINIQRRAE-----TDEVYAQITLLPELDQSEPTSPDAPVQETVHSFCKTLTASDTSTHGG------------------------------FSVLRRHADDCLPPL---DMSQQPP--------------WQELVATDLH---------------------NSEWHFRHIFRGQPRRHLLTTGWSVFVSSK----KLVAGDAFIFLRGENEE------------LRVGVRRHMPSSVISSHSMHIGVLATAAHAITTGTIFSVFYK-----PRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFKRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPS----------SVFRPERVSPWELEPLN-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152257 for 2250 contacts (-67.7/contact) +
2D Compatibility (PS) -33373 + (NN) -5077 + (LL) 12280
1D Compatibility (HY) -5200 + (ID) 2950
Total energy: -186577.0 ( -82.92 by residue)
QMean score : 0.126
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