Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHIRVAAIIRH-QNKILLHTTK-NENYWTLPGGAVE-NELTKEGLQREMREELGEEVTIRELKIIAENRFVYRGE------------EMDSIEFYYIVELYPNSALLELSTFTKIEQFGQNGETDYELNFKWFEIDKVSEIEILPKFLQTELTQLSSDRIKHIQ
1F3Y Chain:A ((14-159))
--RRNVGICLMNNDKKIFAASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTG---QD--QEINLL---GDGSEKPEFGEWSWVTPEQLIDLTV--EFKKPVYKEVLS-------
General information:
TITO was launched using:
RESULT:
Template:
1F3Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42673 for 983 contacts (-43.4/contact) +
2D Compatibility (PS) -13189 + (NN) 3913 + (LL) 1640
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -54009.0 ( -54.94 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1F3Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1F3Y-query.scw
PDB file :
Tito_Scwrl_1F3Y.pdb
: