Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGDKLKGTVTGIRPY--GAFVSLEDGRTGLIHISEIKTGYID---------NIYDVLSVGDEVYVQVIDVDEFTQKASLSLRTLEEERHHIQHRHRFSNNRLKIGFKPLEENLPSWVEEGLAYLNNK
1SMX Chain:A ((39-125))
---ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38587 for 505 contacts (-76.4/contact) +
2D Compatibility (PS) -7876 + (NN) 822 + (LL) 2736
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -48955.0 ( -96.94 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1SMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SMX-query.scw
PDB file :
Tito_Scwrl_1SMX.pdb
: