Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQDQLKQAVAQAAVDHILPHLDSKSIVGVGTGSTANFFIDALARHKA----EFDGAVASSEATAKRLKEHGIPVYELNTVSELEFYVDGADESNERLELIKGGGAALTREKIVAAVAKTFICIADASKLVPILGQFPLPVEVIPMARSHVARQLVKLGGDPVYR----EGVLTDNGNIILDVHNLRIDSPVELEEKINAIVGVVTNGLFAARPADLLLLGTADGVKTLKA
1UJ6 Chain:A ((4-226))
-PLESYKKEAAHAAIAYVQD----GMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGM-ATRALVAGPFGVEELLP
General information:
TITO was launched using:
RESULT:
Template:
1UJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103250 for 1919 contacts (-53.8/contact) +
2D Compatibility (PS) -23656 + (NN) -10995 + (LL) 376
1D Compatibility (HY) -16400 + (ID) 4300
Total energy: -158225.0 ( -82.45 by residue)
QMean score : 0.483
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ6-query.scw
PDB file :
Tito_Scwrl_1UJ6.pdb
: