Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLLLAALLTAGVTAHSISTRAVWQFRNMIKCTIPGSDPLREYNNYGCYCGLGGSGTPVDDLDRCCQTHDHCYNQAKKLESCKFLIDNPYTNTYSYKCSGNVITCSDKNNDCESFICNCDRQAAICFSKVPYNKEYKDLDTKKHC
1GH4 Chain:A ((1-119))
----------------------ALWQFNGMIKCKIPSSEPLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAMKLDSCKVLVDNPYTNNYSYSCSNNEITCSSENNACEAFICNCDRNAAICFSKVPYNKEHKNLD-----
General information:
TITO was launched using:
RESULT:
Template:
1GH4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49028 for 831 contacts (-59.0/contact) +
2D Compatibility (PS) -12967 + (NN) -9111 + (LL) 2652
1D Compatibility (HY) -16000 + (ID) 4650
Total energy: -89104.0 ( -107.23 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1GH4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GH4-query.scw
PDB file :
Tito_Scwrl_1GH4.pdb
: