Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTT-GKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNK-HCRGSTPRC
3V9M Chain:A ((1-118))
--------------------NLIQFGNMIQCANKGSRPSLDYADYGCYCGWGGSGTPVDELDRCCQVHDNCYEQAGKKGCFPKLTLYSWKCTGNVPTCNSKPGCKSFVCACDAAAAKCFAKA--PYKKENYNIDTKKRCK------
General information:
TITO was launched using:
RESULT:
Template:
3V9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36302 for 903 contacts (-40.2/contact) +
2D Compatibility (PS) -12338 + (NN) -5582 + (LL) 2412
1D Compatibility (HY) -8800 + (ID) 2450
Total energy: -63060.0 ( -69.83 by residue)
QMean score : 0.350
(partial model without unconserved sides chains):
PDB file :
Tito_3V9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9M-query.scw
PDB file :
Tito_Scwrl_3V9M.pdb
: