Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEK-RGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKF-CKGKTPSC
3JQL Chain:A ((1-119))
---------------------NLYQFKNMIQCTVPSRSWADFADYGCYCGKGGSGTPVDDLDRCCQTHDNCYNEAENISGCRPYFKTYSYECTQGTLTCKGDNNACAASVCDCDRLAAICFAGA--PYNDANYNIDLKARCN------
General information:
TITO was launched using:
RESULT:
Template:
3JQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46319 for 855 contacts (-54.2/contact) +
2D Compatibility (PS) -12769 + (NN) -8127 + (LL) 2608
1D Compatibility (HY) -6800 + (ID) 2200
Total energy: -73607.0 ( -86.09 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_3JQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JQL-query.scw
PDB file :
Tito_Scwrl_3JQL.pdb
: