Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKP
2C2H Chain:A ((3-136))
--AIKCVVVGDGAVGKTCLLISYTTNAFPG-------DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAP
General information:
TITO was launched using:
RESULT:
Template:
2C2H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55021 for 885 contacts (-62.2/contact) +
2D Compatibility (PS) -13838 + (NN) -8510 + (LL) 952
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -99167.0 ( -112.05 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_2C2H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C2H-query.scw
PDB file :
Tito_Scwrl_2C2H.pdb
: