Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEGIGLAATQVDIHQRIIVIDV---SEN------RDERLVLINPELLEKSGETG-IEEGCLSIPEQRALVPRAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRLKARA
3U04 Chain:A ((3-186))
MSVLSIVTVPDKRLSLCSEEVEKVDQSIRKLVDDMFETMHANQGLGLAAVQVGVHKRILVMNVPEE---IEGYELYGGPYCIINPKIVDISQEKVKLKEGCLSVPGYFDYIVRPQRIAVQYLDYNGNECIIKAQGWLARCLQHEIDHLNGTVFLKYLSKFKRDFAIEKVKKKER-----
General information:
TITO was launched using:
RESULT:
Template:
3U04.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92192 for 1289 contacts (-71.5/contact) +
2D Compatibility (PS) -17213 + (NN) -1255 + (LL) 624
1D Compatibility (HY) -20000 + (ID) 3450
Total energy: -133486.0 ( -103.56 by residue)
QMean score : 0.685
(partial model without unconserved sides chains):
PDB file :
Tito_3U04.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U04-query.scw
PDB file :
Tito_Scwrl_3U04.pdb
: