Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNYKAIGKIGEGTFSEVMKMQSLRDGNYYACKQMKQRFESIEQV--NNLREIQALRRLNPHPNILMLHEVVFDRKSGSLALICELMDMNIYEL-----IRGRRYPLSEKKIMHYMYQLCKSLDHIHRNGIFHRDVKPENILIKQD-VLKLGDFGSCRSV-YSKQPYTEYISTRWYRAPECLLTDGFYTYKMDLWSAGCVFYEIASLQPLFPGVNELDQISKIHDVIGTPAQKILTKFKQSRAMNFDFPFKKGSGIPLLTTNLSPQCLSLLHAMVAYDPDERIAAHQALQHPYFQEQRKTEKRALGSHRKAGFPEHPVAPEPLSNSCQISKEGRKQKQSLKQEEDRPKRRGPAYVMELPKLKLSGVVRLSSYSSPTLQSVLGSGTNGRVPVLRPLKCIPASKKTDPQKDLKPAPQQCRLPTIVRKGGR |
| 3R8M Chain:A ((9-299)) | MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR----T-EGVPSTAIREISLLKELN-HPNIVKLLDVI--HTENKLYLVFEFLHQDLKKFMDASALTGIPLPL----IKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFG--------EVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL-------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R8M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172137 for 2094 contacts (-82.2/contact) +
2D Compatibility (PS) -28461 + (NN) -10381 + (LL) 6436
1D Compatibility (HY) -27600 + (ID) 5050
Total energy: -237193.0 ( -113.27 by residue)
QMean score : 0.432
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