Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSI-AKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
3ZCF Chain:B ((1-103))
-----------------------------------------------------------------GDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQ-APGYSYTAANKNKGIIWGEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE------
General information:
TITO was launched using:
RESULT:
Template:
3ZCF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26710 for 731 contacts (-36.5/contact) +
2D Compatibility (PS) -10787 + (NN) -2599 + (LL) 6416
1D Compatibility (HY) -6400 + (ID) 2150
Total energy: -42230.0 ( -57.77 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_3ZCF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZCF-query.scw
PDB file :
Tito_Scwrl_3ZCF.pdb
: