Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKVLSIFACFLISFSSYANMFDWGTRKVSDTNTYVCNCNQGLADLVEELIPAVVNISSEQIIKQENNNRTKTPSFAPRNNFFDDFREFFEHFDQFFTDRNPSINREVVLLGSGFIID-KSGTIVTNYHVIKNAQDITVTMNDNTYFKAEVLGYDARTDLAVLKIKADKDLSFVTFSNSDKARVGDTVMAIGNPFGLGGSVSTGIISARSRDISI-GTTSEFIQTDAAINRGNSGGPLFDLNGKVIGINTAIYSPSESGGNVGIGFAIPSNLAISIIDTLKSGKKIKHGWLGVQVQPITREFAESLGLKDVKGALVANIVKDSPAEKGGIKVGDILLEFDGKKIDRMTQLPQMVSRTEPGKKVQIKLLRKGKEVNVKVVIEESVNDSKDSNTEENRSISDYITGLTVSNLPKEPKESKNDTPIKGVIVTNVDSNSNATLRGIKKGDIIIQLDGVDIENTENFQKQVDLAIKKSGKDSIMLLIYRNGNQFFTSIKLKK |
3STJ Chain:A ((11-333)) | ---------------------------------------PLPSLAPMLEKVLPAVVSVRVEGT-------------------------------------------QPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGALLNLNGELIGINTAILAP--GGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS------------------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3STJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -152575 for 2581 contacts (-59.1/contact) +
2D Compatibility (PS) -32862 + (NN) -13423 + (LL) 9944
1D Compatibility (HY) -25200 + (ID) 6350
Total energy: -220466.0 ( -85.42 by residue)
QMean score : 0.503
|
|
|