Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIIYCITK--ADNGGAQTHLIQLANHFCVH-HDVYVIVGNHGPMIEQLDARVNVIILEHLVGPIDFKQDILAVKVLAQLFSKIKPDVIHLHSSKAGTVGRIAKFISKSKDTRVVFTAHGWAFTEGVKPAKKFLYLVIEKLMSCITDSIICVSDFDKQLALKYRFNRLKLTTIHNGIADVPAVKQTLKSQSHNNIGEVVGMLPNKQDLQINAPTKHQFVMIARFAYPKL-PQNLIAAIEILKLHNSNHAHFTFIGDGPTLNDCQQQVVQAGLENDVTFLGNV--INASHLLSQYDTFILISKH-EGLPISIIEAMATGLPVIASHVGGISELVADN--GICMMNNQPETIAKVLEKYLIDSDYIKMSNQSRKRYLECFTEEKMIKEVEDVYNGKSTQ------- |
| 2GEK Chain:A ((21-393)) | MRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLP----------DYVVSGGKAVFGPATHRKVKKWIAEGDFDVLHIHEPNAPS---LSMLALQAAEGPIVATFH----TSTTKSLTLSVFQGILRPYHEKIIGRIAVSDLARRWQMEALGS--DAVEIPNGV-DVASFADAPLLDGYP-------------------REGRTVLFLGRYDEPRKGMAVLLAALPKLV-ARFPDVEILIVGRGDEDELREQA---GDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIMRVYETVSGAGIKVQVS |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GEK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -199228 for 2906 contacts (-68.6/contact) +
2D Compatibility (PS) -37813 + (NN) -21020 + (LL) 3816
1D Compatibility (HY) -13600 + (ID) 3400
Total energy: -271245.0 ( -93.34 by residue)
QMean score : 0.454
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