Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTPHIKP-MNDVEIAETVLLPGDPLRAKFIAETYLDDVEQFNTVRNMFGFTGTYKGKKVSVMGSGMGMPSIGIYSYELIHTFGCKKLIRVGSCGAMQENIDLYDVIIAQGASTDSNYVQQYQLPGH-FAPIASYQLLEKAVETARDKGVRHHVGNVLSSDIFYNADTTASERWMRMGILGVEMESAALYMNAIYAGVEALGVFTVSDHLIHETSTTPEERERAFTDMIEIALSLV
4RJ2 Chain:C ((1-232))
--ATPHINAEMGD--FADVVLMPGDPLRAKYIAETFLEDAREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLRDVVIGMGACTDSK-VNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLFYSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESV
General information:
TITO was launched using:
RESULT:
Template:
4RJ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165561 for 2044 contacts (-81.0/contact) +
2D Compatibility (PS) -24954 + (NN) -7267 + (LL) 660
1D Compatibility (HY) -25600 + (ID) 6000
Total energy: -228722.0 ( -111.90 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_4RJ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RJ2-query.scw
PDB file :
Tito_Scwrl_4RJ2.pdb
: