Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITYDLIGNTPLVLL----EHYSDDK-VKIYAKLEQWNPGGSVKDRLGKYLVEKAIQEGRVRAGQTIVEATAGNTGIGLAIAANRHHLKCKIFAPYGFSEEKINIMIALGADVSRTSQSEGMHGA-QLAARSYAEKYGAVYM-NQFESEHNPDTYFHTLGPELTSALQQIDYFVAGIGSGGTFTGTA--RYLKQHHVQCYAVEPEGS-VLNGGPAHAHDTEGIGSEKWPIFLERRLVDGIFTIKDQDAFRNVKSLAINEGLLVGSSSGAALQGALNLKAQLSEG---TIVVVFPDGSDRYMSKQIFNYEENDYE |
2PQM Chain:B ((19-323)) | ----ETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTANEIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLK-EAEKPENEGKTIVIIVPSCGERYLSTDLYKIKD---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PQM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85590 for 2592 contacts (-33.0/contact) +
2D Compatibility (PS) -31803 + (NN) -6822 + (LL) 772
1D Compatibility (HY) -19600 + (ID) 5300
Total energy: -148343.0 ( -57.23 by residue)
QMean score : 0.365
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