Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLK--KDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKP-YQVNKEMMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF |
| 4A8T Chain:A ((25-334)) | ------RDYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQLLKNKSLGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPG-IQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDA-TQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDASS-VEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAG-ANCKFMHCLPA-----------------TRGEEVTDEVIDGKNSICFDEAENRLTSIRGLLVYLMNDY |
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General information:
TITO was launched using:
| RESULT:
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Template: 4A8T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -123844 for 2686 contacts (-46.1/contact) +
2D Compatibility (PS) -33882 + (NN) -21062 + (LL) 1040
1D Compatibility (HY) -24400 + (ID) 5850
Total energy: -207998.0 ( -77.44 by residue)
QMean score : 0.649
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