Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHN-----LTNVDVIGIDEVQFFDDEIVSIVEKLSADGHRVIVAGLDMDFRGEPFEPMPKLMAVSEQVTKLQAVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVAPSDNNKEEL
2B8T Chain:A ((11-202))
------IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSI-RNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLTAICNECGAEATHSLRKIDGKHADYNDDIVKIGCQEFYSAVCRHHHKVPNRPY-----
General information:
TITO was launched using:
RESULT:
Template:
2B8T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72335 for 1417 contacts (-51.0/contact) +
2D Compatibility (PS) -20503 + (NN) -10215 + (LL) 1024
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -123379.0 ( -87.07 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_2B8T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B8T-query.scw
PDB file :
Tito_Scwrl_2B8T.pdb
: