Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKIKNVLLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNEIKNKSVGFLLES-LSKNTANAIALSALMSDKEDLLIVTPSDHLIKDFQAYENAIKKAINLAQKGFLVTFGISIEKPNTEFGYIESPNGLDVKRFIEKPSLEKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENTHFFEQKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVELNAKWSDLGNFNALFEEAANGTKENVSLNQTPIFAKESTNNLVFSHKVSALLGVEDLAIIDTKDALLVAHKDKAKDLKALVSEIETHNQELLQTHTKVYRPWGSYEVLHESGCYKVKILEVKPNARLSLQKHFHRSEHWVVISGMASVELDHQSFELQANESTYIPKNTLHRLANYGKIPLIIIEVQVGEYVGEDDIVRVDDDFNRQNQNA |
2GGO Chain:A ((1-224)) | --MKAFILAAGSGERLEPITH-TRPKAFVPILS-KPLIEYQIEYLRKCGIRDITVIVSSKNKEYFEKKLK------EISIVTQKDDIKGTGAAILSAKF----NDEALIIYGDLFFSNEKEICNIITLK-----EN--AIIGVK-VSNPKDYGVLVLDNQNNLSKIIEKPEIP--------PSNLINAGIYKLNSDIF-TYLDKISISE------------------RGEL-----ELTDA----INL-MA-KDHRVKVIEYEGYWMDIGKPWNIIDVNKWALDNLVFSQNLGNVEDNVKIKGKVIIEEDAEIKSGTYIEGPVYIGKGSEIGPNSYLRPYTILVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAFIGGHVRTGINVTILPGVKIGAYARIYPGAVVNRDVGYGEFFKV----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GGO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -97000 for 1851 contacts (-52.4/contact) +
2D Compatibility (PS) -23915 + (NN) -11017 + (LL) 5672
1D Compatibility (HY) -15600 + (ID) 2200
Total energy: -144060.0 ( -77.83 by residue)
QMean score : 0.408
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