Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGY-LNISHLATSLFVPLIEESILEGELLETCMHYYFTPL-EILPEVIILGCTHFPLIAQKIEGYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACT-FPKVEFHASGDVIWLERQAKEWLKL
2VVT Chain:A ((25-275))
EAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKV--TKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMG------SHVTLIDSGAETVGEVSMLLDYFDIAHTP--PHEFYTTGSAKMFEEIASSWLGI
General information:
TITO was launched using:
RESULT:
Template:
2VVT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -228072 for 2207 contacts (-103.3/contact) +
2D Compatibility (PS) -25814 + (NN) -9286 + (LL) 472
1D Compatibility (HY) -18400 + (ID) 4450
Total energy: -285550.0 ( -129.38 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_2VVT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VVT-query.scw
PDB file :
Tito_Scwrl_2VVT.pdb
: