Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLDQLEVSHDA-DSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG
3SW5 Chain:B ((7-175))
--IKEIAVGKNPPEDVNVIVEVSLGGQPIKYEMDKKSGALFVDRFLYTSMVYPGNYGFVPHTLSEDGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGGKDEKIIAIPTPKLTQRYNNIHDYTDLPEITLKQIEHFFEHYKDLEPGKWAKIEGWRDKSFAHELIKQAIERNK-
General information:
TITO was launched using:
RESULT:
Template:
3SW5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73529 for 1273 contacts (-57.8/contact) +
2D Compatibility (PS) -17497 + (NN) -1484 + (LL) 272
1D Compatibility (HY) -16800 + (ID) 3650
Total energy: -112688.0 ( -88.52 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3SW5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SW5-query.scw
PDB file :
Tito_Scwrl_3SW5.pdb
: