Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVLEVKNLSFKYSQKLILDKLSFSVPKNSITSILAPNGSGKTTLLKCLLGLLKPLEETEIKACNKDILPL--KPYEKAKLIAYIPQVEY--YAFNFSVLDFVLMGKATHLNLFAMPKAKHIKEATSVLERLDLESLKDQGINDLSGGQRQMVLLARSLLQRTPLLLLDEPTSALDLKNQALFFDAIKDEMKK-RELSVLVNIHDPNLVARHSTHVVMLKDKKLFLQASTPIAMTSHNLSALYDTPLEAIWHDDKLVVYAL
2IHY Chain:A ((20-261))
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS-GTVNLFGKMP---GYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---------IDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAML
General information:
TITO was launched using:
RESULT:
Template:
2IHY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -156533 for 1788 contacts (-87.5/contact) +
2D Compatibility (PS) -23997 + (NN) -9226 + (LL) 1312
1D Compatibility (HY) -15600 + (ID) 2600
Total energy: -206644.0 ( -115.57 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_2IHY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IHY-query.scw
PDB file :
Tito_Scwrl_2IHY.pdb
: