Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLETSSHFLKSFRLKRYIGFLLISLALLITPFVRIDGAHLFLISFEHKQLHFLGKIFSAEELQILPFMVILLFIGIFFITTSLGRVWCGWACPQTFLRVLYRDVIETKIFKLHKKISNKQESPKNTPSYKIRKALSVLLFAPVVAGLMMLFFFYFIAPEDFFMYLKNPSDHPIAMGFWLFSALVVLFDI-----VVVAERFCIYLCPYARVQSVLYDNDTLNPIYDEKRGGVLYDNQGRLFPLPPKKRSAENECVNCLH--CVQVCPT---HIDIRKGLQL----ECINCLECVDACTITMAKYNRPSLIQWSSTNAINTRQKVRLVRLKTIAYMGVIAVVVALLIITSFKKERMLLDINRNSDLYEIRSSGYVDNDYVFLFHNTDNKDHEFYFK---ILGQKDIQIKKPLNPIAIKAGQKIKAVVILRKPLKGNATEYKHAKDALIPITIQAYSVDDKNITIERESVFIVPSED |
| 1KQF Chain:B ((2-290)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------AMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKACQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNG-KLEWLIRKDGCMHCEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKCTLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEGVGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHYIGIGPNKEVDDDEE------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1KQF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -88297 for 1972 contacts (-44.8/contact) +
2D Compatibility (PS) -28286 + (NN) -4175 + (LL) 17188
1D Compatibility (HY) -1200 + (ID) 1800
Total energy: -106570.0 ( -54.04 by residue)
QMean score : 0.147
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