Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILE-LDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
3TTH Chain:A ((5-168))
--KKIRLSALEREDLKFVHELNNN--IMSYWFEEPYESYRELEDLHIKHIHDQSERRFIIKDLKDNKVGLVELTEIDFIHRRCEFAIIISPGEEGKGYATEATDLTVEYAFSILNLHKIYLLVDEDNPAALHIYRKSGFAEEGKLVDEYYSKGRYRTAIRMYVLKK-------
General information:
TITO was launched using:
RESULT:
Template:
3TTH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103235 for 1114 contacts (-92.7/contact) +
2D Compatibility (PS) -17165 + (NN) -6421 + (LL) 1140
1D Compatibility (HY) -19600 + (ID) 4800
Total energy: -150081.0 ( -134.72 by residue)
QMean score : 0.551
(partial model without unconserved sides chains):
PDB file :
Tito_3TTH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TTH-query.scw
PDB file :
Tito_Scwrl_3TTH.pdb
: