Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSN---AGHPP-A-EMF-ELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
1V54 Chain:C ((68-260))
----------QGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEA---PFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAAAWYWHFVDVVWLFLYVSIYWWG---
General information:
TITO was launched using:
RESULT:
Template:
1V54.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -185940 for 1349 contacts (-137.8/contact) +
2D Compatibility (PS) -19201 + (NN) -6776 + (LL) 1380
1D Compatibility (HY) -14000 + (ID) 2450
Total energy: -226987.0 ( -168.26 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1V54.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V54-query.scw
PDB file :
Tito_Scwrl_1V54.pdb
: