Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
4D42 Chain:D ((28-281))
--VNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH--LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKL--MPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAI--
General information:
TITO was launched using:
RESULT:
Template:
4D42.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184018 for 2219 contacts (-82.9/contact) +
2D Compatibility (PS) -27586 + (NN) -8000 + (LL) 436
1D Compatibility (HY) -24800 + (ID) 6850
Total energy: -250818.0 ( -113.03 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_4D42.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D42-query.scw
PDB file :
Tito_Scwrl_4D42.pdb
: