Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIVESKLAGVKLVKPKVFGDHRGFFMESYNEKAFH-EAGIDMKFIQDNHSLSVEAGVLRGMHYQTNPKAQTKLIRVATGAIYDVVVDMRKGSPTYGEWEGYILSEANKHQLLVPQGFAHGFCTITENVNVLYKVDQLYSPENDAGIAYDDPDLNITWPTDK-LILSDKDTKHPRLKDAENNFVWENK
1DZR Chain:A ((2-180))
MIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKVTFVQDNHSKSK-KNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGVNLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPFSQLPELSAKDAAAPLLDQAL--------
General information:
TITO was launched using:
RESULT:
Template:
1DZR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76243 for 1372 contacts (-55.6/contact) +
2D Compatibility (PS) -19222 + (NN) -7240 + (LL) 512
1D Compatibility (HY) -17200 + (ID) 4150
Total energy: -123543.0 ( -90.05 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1DZR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DZR-query.scw
PDB file :
Tito_Scwrl_1DZR.pdb
: