Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFTVLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE
4J5Y Chain:D ((5-70))
-----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK-NTVSQMVYKHAISTVVPSRPVRL-----
General information:
TITO was launched using:
RESULT:
Template:
4J5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39699 for 407 contacts (-97.5/contact) +
2D Compatibility (PS) -7035 + (NN) -1220 + (LL) 192
1D Compatibility (HY) -8000 + (ID) 1600
Total energy: -57362.0 ( -140.94 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4J5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J5Y-query.scw
PDB file :
Tito_Scwrl_4J5Y.pdb
: