Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLPRIA-GHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVR-VNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDL----TEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
2VG1 Chain:B ((3-228))
----------------------LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRG---AVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR-------
General information:
TITO was launched using:
RESULT:
Template:
2VG1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111999 for 1749 contacts (-64.0/contact) +
2D Compatibility (PS) -23795 + (NN) -6945 + (LL) 2200
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -162689.0 ( -93.02 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2VG1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG1-query.scw
PDB file :
Tito_Scwrl_2VG1.pdb
: