Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEAYAKEN---EVPIMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLP-DAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEEI----LAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
3TR6 Chain:A ((13-224))
--PELYQYLLQVSLREPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQ----SENNQLIRLFNQKVYKDERVDMILIPIGDGLTLARKK------
General information:
TITO was launched using:
RESULT:
Template:
3TR6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107460 for 1667 contacts (-64.5/contact) +
2D Compatibility (PS) -22181 + (NN) -11334 + (LL) 540
1D Compatibility (HY) -7600 + (ID) 2850
Total energy: -150885.0 ( -90.51 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3TR6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TR6-query.scw
PDB file :
Tito_Scwrl_3TR6.pdb
: