Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHKKLN--GYDRLILMKL
2DY0 Chain:A ((8-180))
--LEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALSIDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPF
General information:
TITO was launched using:
RESULT:
Template:
2DY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144321 for 1366 contacts (-105.7/contact) +
2D Compatibility (PS) -17950 + (NN) 237 + (LL) 312
1D Compatibility (HY) -18800 + (ID) 4600
Total energy: -185122.0 ( -135.52 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_2DY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DY0-query.scw
PDB file :
Tito_Scwrl_2DY0.pdb
: